From 617a8e0f8f6df381a90d41647bcb9ee6f76fbdc7 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 28 Oct 2026 08:19:14 +0000 Subject: [PATCH] build(jupyter): bump the uv-deps group across 1 directory with 11 updates Bumps the uv-deps group with 11 updates in the /apps/cogstack-jupyter-hub directory: | Package | From | To | | --- | --- | --- | | [cogstack-es[os]](https://github.com/CogStack/cogstack-nlp) | `0.2.0` | `0.3.0` | | [virtualenv](https://github.com/pypa/virtualenv) | `21.13.0` | `21.14.13` | | [py7zr](https://github.com/miurahr/py7zr) | `1.1.3` | `1.1.4` | | [isort](https://github.com/PyCQA/isort) | `9.0.1` | `9.0.2` | | [simplejson](https://github.com/simplejson/simplejson) | `4.1.2` | `4.2.0` | | [nltk](https://github.com/nltk/nltk) | `3.10.3` | `3.10.4` | | [pymssql](https://github.com/pymssql/pymssql) | `2.4.2` | `2.4.5` | | [mysql-connector-python](https://github.com/mysql/mysql-connector-python) | `26.7.0` | `26.10.0` | | [jsonpickle](https://github.com/jsonpickle/jsonpickle) | `4.1.2` | `4.1.4` | | [neo4j](https://github.com/neo4j/neo4j-python-driver) | `6.3.1` | `6.4.1` | | [ruff](https://github.com/astral-sh/ruff) | `0.16.9` | `0.17.2` | Updates `cogstack-es[os]` from 0.2.0 to 0.3.0 - [Release notes](https://github.com/CogStack/cogstack-nlp/releases) - [Commits](https://github.com/CogStack/cogstack-nlp/compare/MedCAT2/v0.2.0...MedCAT2/v0.3.0) Updates `virtualenv` from 21.13.0 to 21.14.13 - [Release notes](https://github.com/pypa/virtualenv/releases) - [Changelog](https://github.com/pypa/virtualenv/blob/main/docs/changelog.rst) - [Commits](https://github.com/pypa/virtualenv/compare/21.13.0...21.14.13) Updates `py7zr` from 1.1.3 to 1.1.4 - [Release notes](https://github.com/miurahr/py7zr/releases) - [Changelog](https://github.com/miurahr/py7zr/blob/master/docs/Changelog.rst) - [Commits](https://github.com/miurahr/py7zr/compare/v1.1.3...v1.1.4) Updates `isort` from 9.0.1 to 9.0.2 - [Release notes](https://github.com/PyCQA/isort/releases) - [Changelog](https://github.com/PyCQA/isort/blob/main/CHANGELOG.md) - [Commits](https://github.com/PyCQA/isort/compare/9.0.1...9.0.2) Updates `simplejson` from 4.1.2 to 4.2.0 - [Release notes](https://github.com/simplejson/simplejson/releases) - [Changelog](https://github.com/simplejson/simplejson/blob/main/CHANGES.txt) - [Commits](https://github.com/simplejson/simplejson/compare/v4.1.2...v4.2.0) Updates `nltk` from 3.10.3 to 3.10.4 - [Release notes](https://github.com/nltk/nltk/releases) - [Changelog](https://github.com/nltk/nltk/blob/develop/ChangeLog) - [Commits](https://github.com/nltk/nltk/compare/v3.10.3...v3.10.4) Updates `pymssql` from 2.4.2 to 2.4.5 - [Release notes](https://github.com/pymssql/pymssql/releases) - [Changelog](https://github.com/pymssql/pymssql/blob/master/ChangeLog.rst) - [Commits](https://github.com/pymssql/pymssql/compare/v2.4.2...v2.4.5) Updates `mysql-connector-python` from 26.7.0 to 26.10.0 - [Changelog](https://github.com/mysql/mysql-connector-python/blob/trunk/CHANGES.txt) - [Commits](https://github.com/mysql/mysql-connector-python/compare/26.7.0...26.10.0) Updates `jsonpickle` from 4.1.2 to 4.1.4 - [Release notes](https://github.com/jsonpickle/jsonpickle/releases) - [Changelog](https://github.com/jsonpickle/jsonpickle/blob/v4.1.4/CHANGES.rst) - [Commits](https://github.com/jsonpickle/jsonpickle/compare/v4.1.2...v4.1.4) Updates `neo4j` from 6.3.1 to 6.4.1 - [Release notes](https://github.com/neo4j/neo4j-python-driver/releases) - [Changelog](https://github.com/neo4j/neo4j-python-driver/blob/6.x/CHANGELOG.md) - [Commits](https://github.com/neo4j/neo4j-python-driver/compare/6.3.1...6.4.1) Updates `ruff` from 0.16.9 to 0.17.2 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](https://github.com/astral-sh/ruff/compare/0.16.9...0.17.2) --- updated-dependencies: - dependency-name: cogstack-es[os] dependency-version: 0.3.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-deps - dependency-name: virtualenv dependency-version: 21.14.13 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-deps - dependency-name: py7zr dependency-version: 1.1.4 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: uv-deps - dependency-name: isort dependency-version: 9.0.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: uv-deps - dependency-name: simplejson dependency-version: 4.2.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-deps - dependency-name: nltk dependency-version: 3.10.4 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: uv-deps - dependency-name: pymssql dependency-version: 2.4.5 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: uv-deps - dependency-name: mysql-connector-python dependency-version: 26.10.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-deps - dependency-name: jsonpickle dependency-version: 4.1.4 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: uv-deps - dependency-name: neo4j dependency-version: 6.4.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-deps - dependency-name: ruff dependency-version: 0.17.2 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: uv-deps ... Signed-off-by: dependabot[bot] --- apps/cogstack-jupyter-hub/pyproject.toml | 22 +-- apps/cogstack-jupyter-hub/uv.lock | 199 ++++++++++++----------- 2 files changed, 112 insertions(+), 109 deletions(-) diff --git a/apps/cogstack-jupyter-hub/pyproject.toml b/apps/cogstack-jupyter-hub/pyproject.toml index b0533a0b..d22dbc53 100644 --- a/apps/cogstack-jupyter-hub/pyproject.toml +++ b/apps/cogstack-jupyter-hub/pyproject.toml @@ -9,8 +9,8 @@ dependencies = [ "medcat[spacy,meta-cat,deid,rel-cat,dict-ner]==2.9.0", "medcat-den==0.6.0", # TODO: cogstack-es 8/9 handling - "cogstack-es[os]==0.2.0", - "virtualenv==21.13.0", + "cogstack-es[os]==0.3.0", + "virtualenv==21.14.13", "ipywidgets==8.1.9", "requests>=2.32.2", "jupyter==1.1.1", @@ -23,28 +23,28 @@ dependencies = [ "jupyterhub-client==0.1.0", "pytesseract==0.3.13", "ipyparallel==9.2.0", - "py7zr==1.1.3", - "isort==9.0.1", + "py7zr==1.1.4", + "isort==9.0.2", "html2text==2025.4.15", "jsoncsv==2.2.5", - "simplejson==4.1.2", - "nltk==3.10.3", + "simplejson==4.2.0", + "nltk==3.10.4", "bokeh==3.9.2", "seaborn==0.13.2", "matplotlib==3.11.2", "graphviz==0.21", "plotly==7.1.0", "tqdm>=4.70.0", - "pymssql==2.4.2", - "mysql-connector-python==26.7.0", - "jsonpickle==4.1.2", + "pymssql==2.4.5", + "mysql-connector-python==26.10.0", + "jsonpickle==4.1.4", "jsonext==0.4.2", "psycopg[c,binary,pool]==3.3.6", "pyodbc==5.3.0", "openpyxl==3.1.5", "dvc==3.67.1", "GitPython==3.1.57", - "neo4j==6.3.1", + "neo4j==6.4.1", "PyYAML==6.0.2", "opencv-python==5.0.0.93", "click==8.5.0", @@ -52,7 +52,7 @@ dependencies = [ "xnat==0.8.1", "keras==3.15.1", "opensearch-py>=2.8.0", - "ruff==0.16.9", + "ruff==0.17.2", ] [tool.uv] diff --git a/apps/cogstack-jupyter-hub/uv.lock b/apps/cogstack-jupyter-hub/uv.lock index 82af30d4..8f743048 100644 --- a/apps/cogstack-jupyter-hub/uv.lock +++ b/apps/cogstack-jupyter-hub/uv.lock @@ -1,5 +1,5 @@ version = 1 -revision = 3 +revision = 5 requires-python = "==3.11.*" resolution-markers = [ "sys_platform == 'darwin'", @@ 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specifier = "==9.2.0" }, { name = "ipywidgets", specifier = "==8.1.9" }, - { name = "isort", specifier = "==9.0.1" }, + { name = "isort", specifier = "==9.0.2" }, { name = "jsoncsv", specifier = "==2.2.5" }, { name = "jsonext", specifier = "==0.4.2" }, - { name = "jsonpickle", specifier = "==4.1.2" }, + { name = "jsonpickle", specifier = "==4.1.4" }, { name = "jupyter", specifier = "==1.1.1" }, { name = "jupyter-contrib-core", specifier = "==0.4.2" }, { name = "jupyter-contrib-nbextensions", specifier = "==0.7.0" }, @@ -701,26 +701,26 @@ requires-dist = [ { name = "matplotlib", specifier = "==3.11.2" }, { name = "medcat", extras = ["spacy", "meta-cat", "deid", "rel-cat", "dict-ner"], specifier = "==2.9.0" }, { name = "medcat-den", specifier = "==0.6.0" }, - { name = "mysql-connector-python", specifier = "==26.7.0" }, - { name = "neo4j", specifier = "==6.3.1" }, - { name = "nltk", specifier = "==3.10.3" }, + { name = "mysql-connector-python", specifier = "==26.10.0" }, + { name = 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