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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 12

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 28 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 5

Repositories

Showing 10 of 716 repositories
  • openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    AllenNeuralDynamics/openscope-community-predictive-processing's past year of commit activity
    Python 28 MIT 13 32 2 Updated Oct 19, 2026
  • Aind.Physiology.Hsfp Public

    A repository for the Hyper-Spectral Fiber Photometry (HSFP) system

    AllenNeuralDynamics/Aind.Physiology.Hsfp's past year of commit activity
    C# 1 MIT 0 0 0 Updated Oct 19, 2026
  • Aind.Physiology.Fip Public

    A repository with a Fiber Photometry acquisition pipeline

    AllenNeuralDynamics/Aind.Physiology.Fip's past year of commit activity
    C# 0 MIT 0 5 4 Updated Oct 19, 2026
  • aind-ephys-processing-qc Public

    CodeOcean Capsule for ephys quality control

    AllenNeuralDynamics/aind-ephys-processing-qc's past year of commit activity
    Python 0 MIT 2 0 0 Updated Oct 19, 2026
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper's past year of commit activity
    Python 0 MIT 2 38 6 Updated Oct 19, 2026
  • aind-fip-dff Public

    This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

    AllenNeuralDynamics/aind-fip-dff's past year of commit activity
    Python 0 MIT 1 5 2 Updated Oct 19, 2026
  • zephyr Public

    A network to predict breathing signals from video

    AllenNeuralDynamics/zephyr's past year of commit activity
    Python 0 MIT 0 1 0 Updated Oct 19, 2026
  • galen-uv-workflows Public

    Workflows using uv and commitizen to ci, tag, and publish python projects

    AllenNeuralDynamics/galen-uv-workflows's past year of commit activity
    0 MIT 0 0 1 Updated Oct 19, 2026
  • aind-low-point Public

    A pinpoint knockoff but in python

    AllenNeuralDynamics/aind-low-point's past year of commit activity
    Python 0 MIT 0 0 5 Updated Oct 19, 2026
  • brainwasher Public

    0354: control software for automated tissue clearing system

    AllenNeuralDynamics/brainwasher's past year of commit activity
    Python 0 MIT 1 15 8 Updated Oct 19, 2026