Issues

• Remove all TxDb packages that were deprecated in BioC 3.24 from BioC 3.25

  Bioconductor/txdbmaker#21 · Filter by author hpages opened on Nov 2, 2026

• consider how to introduce biotype or gene_type into the TxDb productions

  enhancementhelp wanted
  Feature

  Bioconductor/txdbmaker#15 · Filter by author vjcitn opened on Feb 6, 2026

• makeTxDbFromGRanges dropping a lot of transcripts

  Bioconductor/txdbmaker#12 · Filter by author Rohit-Satyam opened on Jul 19, 2025

• Add 'genome' argument to makeTxDbFromGFF()

  Bioconductor/txdbmaker#2 · Filter by author hpages opened on Mar 23, 2024

• How to make a TxDb object for the T2T-CHM13v2.0 genome (telomere to telomere Human genome)

  Bioconductor/txdbmaker#1 · Filter by author hpages opened on Mar 22, 2024
  4

• support transcripts with >1 CDS?

  Bioconductor/txdbmaker#3 · Filter by author jayoung opened on Jan 28, 2022
  3

• makeTxDbFromBiomart should check for zero exon genes

  Bioconductor/txdbmaker#5 · Filter by author mukhyala opened on Apr 15, 2018