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@EGA-archive

EGA-archive

European Genome-Phenome Archive

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  1. ega-quickview ega-quickview Public

    FUSE file system to access EGA files securely and remotely

    C 6

  2. crypt4gh crypt4gh Public

    GA4GH cryptographic tools

    Python 25 19

  3. ega-download-client ega-download-client Public

    A Python-based EGA download client

    Python 124 54

  4. beacon2-pi-api beacon2-pi-api Public

    Beacon v2 Production Implementation (API)

    Python 10 18

Repositories

Showing 10 of 47 repositories
  • beacon2-pi-api Public

    Beacon v2 Production Implementation (API)

    EGA-archive/beacon2-pi-api's past year of commit activity
    Python 10 Apache-2.0 18 8 1 Updated Oct 23, 2026
  • refgenDetector Public

    RefgenDetector infers the reference genome assembly used to generate alignment and VCF files.

    EGA-archive/refgenDetector's past year of commit activity
    Python 2 2 0 0 Updated Oct 21, 2026
  • beacon-verifier-v2 Public
    EGA-archive/beacon-verifier-v2's past year of commit activity
    Python 1 Apache-2.0 1 1 0 Updated Oct 20, 2026
  • beacon-template-ui Public
    EGA-archive/beacon-template-ui's past year of commit activity
    JavaScript 6 Apache-2.0 8 3 0 Updated Oct 19, 2026
  • AF_hail_pipeline Public

    This pipeline generates a VCF annotated with allele frequencies stratified by ancestry and sex.

    EGA-archive/AF_hail_pipeline's past year of commit activity
    HTML 1 0 0 0 Updated Oct 16, 2026
  • AF_bcftools_pipeline Public

    Pipeline to run QC and calculate AFs stratified by sex and ancestry using bcftools

    EGA-archive/AF_bcftools_pipeline's past year of commit activity
    Shell 1 1 0 0 Updated Oct 15, 2026
  • beacon-ri-documentation Public
    EGA-archive/beacon-ri-documentation's past year of commit activity
    TypeScript 0 Apache-2.0 1 1 0 Updated Oct 15, 2026
  • beacon2-ri-tools-v2 Public
    EGA-archive/beacon2-ri-tools-v2's past year of commit activity
    Python 5 Apache-2.0 19 2 0 Updated Oct 14, 2026
  • fega-metadata-schema Public

    Repository dedicated to the development of the Federated EGA (FEGA) metadata schemas and documentation

    EGA-archive/fega-metadata-schema's past year of commit activity
    Python 2 5 7 0 Updated Sep 28, 2026
  • phenopackets-to-BFF Public
    EGA-archive/phenopackets-to-BFF's past year of commit activity
    Python 2 0 0 0 Updated Sep 15, 2026
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