Issues

• Error Taxonemy ID

  Bug

  PyEED/pyeed#147 · Filter by author NiklasAbraham opened on Mar 25, 2025

• Errror Mapping Site DNA

  bug
  PyEED/pyeed#144 · Filter by author NiklasAbraham opened on Feb 28, 2025

• We need to implement Jan Ranges Version of md models, will greatly improve croos platform programming languag cabilities

  Feature

  PyEED/pyeed#142 · Filter by author NiklasAbraham opened on Feb 8, 2025

• Handling of URL when it comes to tools, some are done for us and our server architecture others are not being able to be understood.

  Bug

  PyEED/pyeed#135 · Filter by author NiklasAbraham opened on Feb 7, 2025
  

• Neo4J BackUp has to be done with an extra file but how? Sudo Rights ....

  Task

  PyEED/pyeed#134 · Filter by author NiklasAbraham opened on Feb 6, 2025
  

• Docker Needs cleare start commands for each container

  Task

  PyEED/pyeed#133 · Filter by author NiklasAbraham opened on Feb 6, 2025
  

• Embedding Calculation fix multple devices GPU

  Task

  PyEED/pyeed#132 · Filter by author NiklasAbraham opened on Feb 6, 2025
  

• Where db connection is given new tools in the init or in the method

  Task

  PyEED/pyeed#131 · Filter by author NiklasAbraham opened on Feb 6, 2025
  

• Error mapper for Protein

  Bug

  PyEED/pyeed#130 · Filter by author NiklasAbraham opened on Feb 6, 2025
  

• Error mapper for DNA

  Bug

  PyEED/pyeed#129 · Filter by author NiklasAbraham opened on Feb 6, 2025
  

• In the DNA Fetching the comment for not fetching all of the proteins exists needs to be fixed

  Bug

  PyEED/pyeed#128 · Filter by author NiklasAbraham opened on Feb 6, 2025
  

• Map CDS Region error all the time jsust pull 100 DNAS

  Bug

  PyEED/pyeed#127 · Filter by author NiklasAbraham opened on Feb 6, 2025
  

• Error in some DNAs when the taxonmy id is wrong better handling of errorr.

  Bug

  PyEED/pyeed#126 · Filter by author NiklasAbraham opened on Feb 6, 2025
  

• Random Mutation Creater, with random and pseudo random mutation generation

  PyEED/pyeed#117 · Filter by author NiklasAbraham opened on Dec 22, 2024
  

• Data Cleaning, remove Proteins and start and end regions. Only mature protein. Remove double entries.

  PyEED/pyeed#114 · Filter by author NiklasAbraham opened on Dec 22, 2024
  

• BackUp options for neo4j database

  PyEED/pyeed#106 · Filter by author NiklasAbraham opened on Nov 30, 2024

• Convert DNA in Protein Sequence with codon table, analysis tool

  PyEED/pyeed#103 · Filter by author NiklasAbraham opened on Nov 30, 2024
  

• NCBIProteinToPyeeddoes not extract locus_tag from entry

  PyEED/pyeed#102 · Filter by author haeussma opened on Nov 10, 2024

• Extension of data model - References and Substrates

  PyEED/pyeed#27 · Filter by author gfeuerriegel opened on Nov 16, 2023 · Ontology data model refactor
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