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Su Lab

Code repos for the Su Lab at The Scripps Research Institute

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  1. WikidataIntegrator WikidataIntegrator Public

    A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint

    Python 261 47

  2. DrugMechDB DrugMechDB Public

    A database of paths that represent the mechanism of action from a drug to a disease in an indication.

    Jupyter Notebook 79 24

  3. Applied-Bioinformatics Applied-Bioinformatics Public

    Student course material for the Applied Bioinformatics course at Scripps Research

    Jupyter Notebook 39 31

  4. YPet YPet Public

    Javascript library to rapidly annotate paragraphs of text on websites with the goal of making the annotation process as fast and simple as possible.

    JavaScript 31 3

  5. mark2cure mark2cure Public

    Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.

    Python 14 8

  6. sparql_to_pandas sparql_to_pandas Public

    Example for accessing SPARQL endpoints in Python with Pandas

    Jupyter Notebook 13 9

Repositories

Showing 10 of 109 repositories
  • coPI.science Public
    SuLab/coPI.science's past year of commit activity
    Python 4 0 14 0 Updated Oct 16, 2026
  • sulab.org Public
    SuLab/sulab.org's past year of commit activity
    HTML 0 BSD-3-Clause 9 0 1 Updated Oct 12, 2026
  • DrugMechDB-agentic Public

    Agent-assisted curation of DrugMechDB drug–disease mechanism paths, with per-edge evidence.

    SuLab/DrugMechDB-agentic's past year of commit activity
    Python 1 CC0-1.0 0 43 1 Updated Sep 15, 2026
  • ECAA-workflow Public
    SuLab/ECAA-workflow's past year of commit activity
    Rust 3 Apache-2.0 0 2 0 Updated Aug 5, 2026
  • OKN-WOBD Public
    SuLab/OKN-WOBD's past year of commit activity
    Python 2 2 4 0 Updated Jul 21, 2026
  • lotz-ivd Public

    IVD single-cell atlas: cell types and states in the human intervertebral disc across aging and degeneration

    SuLab/lotz-ivd's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 23, 2026
  • claude-ro-crate-skill Public

    Claude Code skill to create RO-Crate packages for recording workflows, execution, and provenance

    SuLab/claude-ro-crate-skill's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jun 23, 2026
  • DrugMechDB Public

    A database of paths that represent the mechanism of action from a drug to a disease in an indication.

    SuLab/DrugMechDB's past year of commit activity
    Jupyter Notebook 79 CC0-1.0 24 9 (1 issue needs help) 3 Updated Jun 3, 2026
  • TSRI-CBB Public

    This is the Github repository for The Scripps Research Institute Computational Biology and Bioinformatics (CBB) community and affiliated core track for graduate students.

    SuLab/TSRI-CBB's past year of commit activity
    HTML 9 1 1 (1 issue needs help) 0 Updated May 25, 2026
  • agentic-bte Public Forked from mastorga589/agentic-bte

    Biomedical research platform combining LLMs with BioThings Explorer knowledge graphs. Features MCP Server and LangGraph multi-agent workflows for drug discovery and biomedical question answering.

    SuLab/agentic-bte's past year of commit activity
    Python 1 MIT 1 0 0 Updated Jan 30, 2026
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