All pull requests

Pull requests

• Remove support for the NetMHCcons prediction algorithm

  #1466·susannasiebert opened Sep 17, 2026Contributor·

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• Add new argument to aggregate report creation to limit predictions to specific alleles

  #1460·susannasiebert opened Sep 4, 2026Contributor·

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• Remove support for the PickPocket prediction algorithm

  #1457·susannasiebert opened Aug 28, 2026Contributor·1 task done·

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• Update generate protein fasta and create peptide ordering form commands to use transcripts.fa

  #1453·susannasiebert opened Aug 18, 2026Contributor·1 task done·

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• Implement new select, select_class_i, and select_class_ii algorithm options to run subset of algorithms

  #1452·susannasiebert opened Aug 12, 2026Contributor·

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• Preserve AttributeError exceptions from CLI commands

  #1444·YT-er opened Jul 28, 2026Contributor·

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• Parse transcript prioritization booleans explicitly

  #1443·YT-er opened Jul 28, 2026Contributor·

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• Replace dynamic evaluation in filtering

  #1442·YT-er opened Jul 28, 2026Contributor·

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• Bump setuptools from 57.4.0 to 83.0.0 in /docs

  dependenciespython
  #1437·dependabot[bot] opened Jul 22, 2026Bot·

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• Refactor pVACbind run planning without behavior changes

  #1407·martin1cifuentes opened Jun 6, 2026·

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• Enforce pVACvector pathfinder preconditions

  #1380·maksimf opened Mar 18, 2026·

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• Remove pdb debugger from output_parser.py

  #1378·maksimf opened Mar 17, 2026·

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• Added sortability to Acpt/Rej/Rev columns

  #1270·ldhtnp opened Jul 17, 2025Contributor·

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