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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    HTML 841 165

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 180 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 367 64

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 200 44

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 719 116

Repositories

Showing 10 of 399 repositories
  • pic-sure-hpds-etl Public
    hms-dbmi/pic-sure-hpds-etl's past year of commit activity
    Java 0 Apache-2.0 1 0 0 Updated Oct 13, 2026
  • pic-sure Public

    PIC-SURE API

    hms-dbmi/pic-sure's past year of commit activity
    Java 6 Apache-2.0 5 0 16 Updated Oct 13, 2026
  • udi-yac Public

    Monorepo containing front-end/back-end code for the UDI visualization language and YAC chat interface.

    hms-dbmi/udi-yac's past year of commit activity
    Python 4 MIT 2 57 8 Updated Oct 13, 2026
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control's past year of commit activity
    1 Apache-2.0 9 0 0 Updated Oct 13, 2026
  • pic-sure-r-adapter-hpds Public

    Adapter library for PIC-SURE HPDS Resources (in R language)

    hms-dbmi/pic-sure-r-adapter-hpds's past year of commit activity
    R 2 Apache-2.0 3 0 2 Updated Oct 13, 2026
  • pic-sure-python-adapter-hpds Public

    A Python client library for PIC-SURE-HPDS resources

    hms-dbmi/pic-sure-python-adapter-hpds's past year of commit activity
    Python 0 Apache-2.0 2 0 2 Updated Oct 13, 2026
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend's past year of commit activity
    TypeScript 1 Apache-2.0 3 1 16 Updated Oct 13, 2026
  • pic-sure-all-in-one Public
    hms-dbmi/pic-sure-all-in-one's past year of commit activity
    Shell 4 Apache-2.0 12 0 3 Updated Oct 13, 2026
  • hypatio-app Public
    hms-dbmi/hypatio-app's past year of commit activity
    Python 4 1 0 8 Updated Oct 12, 2026
  • dbmi-fileservice Public
    hms-dbmi/dbmi-fileservice's past year of commit activity
    Python 2 0 0 4 Updated Oct 12, 2026
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