Nextstrain
Real-time tracking of pathogen evolution
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Showing 10 of 105 repositories
- cli Public
The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
- shared Public
Shared internal tooling for pathogen workflows. Used by our individual pathogen repos which produce Nextstrain builds.
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- .github Public
- variant-nowcast-hub Public Forked from reichlab/variant-nowcast-hub
A repository to store COVID-19 variant nowcasts collected as a modeling hub.
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