Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
-
Updated
Dec 18, 2024 - R
#
singlecellexperiment
Here are 8 public repositories matching this topic...
R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
python wrapper bioinformatics dimensionality-reduction tsne forceatlas2 umap dimension-reduction force-directed-graphs wrappers seurat singlecellexperiment singlecellexperiment-objects paga phate opentsne pacmap dimensional-reduction
-
Updated
Dec 30, 2024 - R
Brings SingleCellExperiment objects to the tidyverse
ggplot2 dplyr plotly tidyverse bioconductor tibble tidyr single-cell-rna-seq single-cell-sequencing singlecellexperiment
-
Updated
Sep 15, 2026 - R
Container class for single-cell experiments
-
Updated
Oct 5, 2026 - Python
Interactive flow and mass cytometry gating in R/Shiny on SingleCellExperiment objects, with Gating-ML round-trip. Browser version (no R): github.com/david-priest/GateLab
r shiny bioconductor immunology r-package gating single-cell fcs cytof flow-cytometry mass-cytometry cytometry singlecellexperiment gating-ml
-
Updated
Oct 8, 2026 - R
Pseudotime analysis in newer versions of R using monocle2
-
Updated
May 20, 2026 - R
This repository consists of two **Jupyter Notebooks** created to document a comparison of a mouse brain snATAC-seq (single nuclei assay for transposase accessible chromatin with sequencing) data set from http://catlas.org/mousebrain/ with a scRNA-seq (single cell RNA sequencing) data set from the Linnarsson lab's http://mousebrain.org/. Specific…
-
Updated
Jul 8, 2022 - Jupyter Notebook
End-to-end reproducible R/Bioconductor pipeline for donor-aware paired single-cell RNA-seq analysis featuring QC, clustering, pseudobulk differential expression, functional enrichment, and automated reporting.
bioinformatics genomics rstats bioconductor transcriptomics reactome edger single-cell-rna-seq singlecellexperiment pseudobulk go-enrichment
-
Updated
Aug 7, 2026 - HTML
Add this topic to your repo
To associate your repository with the singlecellexperiment topic, visit your repo's landing page and select "manage topics."